STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT05_04430Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (355 aa)    
Predicted Functional Partners:
AT05_04425
Sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.757
AT05_09505
Geranylgeranylglyceryl phosphate synthase; Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P).
  
     0.726
AT05_00450
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.718
AT05_04310
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 
  0.682
AT05_10635
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.655
AT05_02655
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
    0.627
AT05_09745
Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.624
ruvC
Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.
       0.598
AT05_04510
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.591
AT05_04420
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.572
Your Current Organism:
Schleiferia thermophila
NCBI taxonomy Id: 1453500
Other names: S. thermophila str. Yellowstone, Schleiferia thermophila str. Yellowstone
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.