STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT05_04455Copper transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (731 aa)    
Predicted Functional Partners:
AT05_03010
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.802
AT05_01705
Heavy metal transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.782
AT05_04445
Catalyzes the oxidation of dihydrolipoamide to lipoamide; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.765
AT05_04460
Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.755
AT05_00900
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.738
AT05_11505
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
 0.725
AT05_11535
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
 0.725
AT05_04450
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.678
AT05_05605
Cystathionine beta-synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.603
AT05_07240
Heat-shock protein Hsp70; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
  
 0.595
Your Current Organism:
Schleiferia thermophila
NCBI taxonomy Id: 1453500
Other names: S. thermophila str. Yellowstone, Schleiferia thermophila str. Yellowstone
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