STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT05_04460Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology. (406 aa)    
Predicted Functional Partners:
AT05_09260
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 0.997
AT05_05270
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
0.994
AT05_00130
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
0.986
AT05_05280
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 
0.983
AT05_06145
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
0.981
AT05_02130
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
0.976
AT05_07290
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
0.974
AT05_05690
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 
0.965
AT05_03100
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.953
AT05_10030
Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 0.948
Your Current Organism:
Schleiferia thermophila
NCBI taxonomy Id: 1453500
Other names: S. thermophila str. Yellowstone, Schleiferia thermophila str. Yellowstone
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.