STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT05_04500Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (254 aa)    
Predicted Functional Partners:
AT05_04505
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.794
AT05_04495
Histidine ammonia-lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
AT05_04510
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.736
panC
Pantoate--beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.
 
  
 0.727
panB
3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.
 
  
  0.703
AT05_04515
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.668
AT05_04520
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.668
AT05_04490
NUDIX hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.536
AT05_04485
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.423
AT05_02500
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.414
Your Current Organism:
Schleiferia thermophila
NCBI taxonomy Id: 1453500
Other names: S. thermophila str. Yellowstone, Schleiferia thermophila str. Yellowstone
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.