STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT05_04585Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (298 aa)    
Predicted Functional Partners:
AT05_04600
BatC protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.898
AT05_04605
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
   
 0.878
AT05_04610
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
 0.857
AT05_04580
Von Willebrand factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.842
AT05_04595
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
   
 0.839
AT05_04590
Aerotolerance protein BatA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.829
AT05_04575
ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.795
AT05_09540
Heat shock protein hsp15; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.615
AT05_04570
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 
 0.481
ahcY
S-adenosyl-L-homocysteine hydrolase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.
       0.458
Your Current Organism:
Schleiferia thermophila
NCBI taxonomy Id: 1453500
Other names: S. thermophila str. Yellowstone, Schleiferia thermophila str. Yellowstone
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