STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT05_04775Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (687 aa)    
Predicted Functional Partners:
AT05_04780
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.601
AT05_04785
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.585
AT05_04790
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.471
AT05_04770
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.445
AT05_06810
beta-N-acetylglucosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.442
ligA
DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.
       0.404
Your Current Organism:
Schleiferia thermophila
NCBI taxonomy Id: 1453500
Other names: S. thermophila str. Yellowstone, Schleiferia thermophila str. Yellowstone
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.