STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT05_05265Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (372 aa)    
Predicted Functional Partners:
AT05_05270
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
    0.797
AT05_05280
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
 0.746
AT05_05275
Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.734
AT05_00350
Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.707
AT05_05285
Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.609
AT05_01270
Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.573
rsgA
GTPase RsgA; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.
       0.547
AT05_03495
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
 0.515
AT05_01935
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.503
AT05_09260
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
 0.501
Your Current Organism:
Schleiferia thermophila
NCBI taxonomy Id: 1453500
Other names: S. thermophila str. Yellowstone, Schleiferia thermophila str. Yellowstone
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.