STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT05_05585Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (927 aa)    
Predicted Functional Partners:
AT05_00995
Cytochrome C biogenesis protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.
  
     0.662
AT05_06845
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.659
AT05_04635
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.647
AT05_00035
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.643
AT05_09275
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.633
AT05_03745
Cell envelope biogenesis protein TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.610
AT05_01665
TonB-denpendent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.608
AT05_01130
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.530
AT05_05575
Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.524
AT05_05580
Nitrogen regulatory protein P-II; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.524
Your Current Organism:
Schleiferia thermophila
NCBI taxonomy Id: 1453500
Other names: S. thermophila str. Yellowstone, Schleiferia thermophila str. Yellowstone
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