STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT05_05850Carbohydrate esterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (353 aa)    
Predicted Functional Partners:
AT05_09755
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.772
AT05_08485
Esterase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.744
AT05_09070
Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.736
AT05_09995
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the glycosyl hydrolase 13 family.
 
  
  0.706
AT05_00755
Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.704
AT05_04555
Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 31 family.
   
  0.698
AT05_08480
Glutathione synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.685
AT05_02165
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.666
AT05_02160
GMP synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.648
AT05_08420
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.494
Your Current Organism:
Schleiferia thermophila
NCBI taxonomy Id: 1453500
Other names: S. thermophila str. Yellowstone, Schleiferia thermophila str. Yellowstone
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