STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT05_06240Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (190 aa)    
Predicted Functional Partners:
AT05_05075
FAD-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.800
psd
Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).
       0.794
AT05_06235
Phosphatidate cytidylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CDS family.
       0.794
AT05_04765
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.726
AT05_04670
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.709
AT05_00790
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.664
AT05_05535
Transmembrane (4fe-4S) cluster-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.664
AT05_05550
Fe-S oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.664
AT05_04450
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.659
AT05_09320
Arginase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the arginase family.
  
     0.653
Your Current Organism:
Schleiferia thermophila
NCBI taxonomy Id: 1453500
Other names: S. thermophila str. Yellowstone, Schleiferia thermophila str. Yellowstone
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