STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT05_06840Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (174 aa)    
Predicted Functional Partners:
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.606
AT05_04925
RNA polymerase rpb6; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
   0.566
AT05_02405
AMP-binding enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.517
AT05_04415
AMP-dependent synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.517
AT05_07110
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
  0.517
AT05_06835
Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.497
AT05_04990
Pyridoxal-dependent decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.449
AT05_06845
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.419
Your Current Organism:
Schleiferia thermophila
NCBI taxonomy Id: 1453500
Other names: S. thermophila str. Yellowstone, Schleiferia thermophila str. Yellowstone
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