STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT05_07475Collagen-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1063 aa)    
Predicted Functional Partners:
AT05_07480
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
     0.938
AT05_07490
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
   0.794
AT05_02820
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.786
AT05_04270
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.720
AT05_03745
Cell envelope biogenesis protein TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.669
AT05_01665
TonB-denpendent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.620
AT05_08830
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
    0.583
AT05_02530
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.535
AT05_01925
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.500
AT05_02635
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.460
Your Current Organism:
Schleiferia thermophila
NCBI taxonomy Id: 1453500
Other names: S. thermophila str. Yellowstone, Schleiferia thermophila str. Yellowstone
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.