STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT05_07935Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (844 aa)    
Predicted Functional Partners:
AT05_07940
UDP pyrophosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
 
    0.968
AT05_04920
Outer membrane assembly lipoprotein YfiO; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.930
AT05_07925
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
 0.908
AT05_07930
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.901
AT05_07945
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 
   0.832
AT05_06160
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.820
lpxC
hydroxymyristoyl-ACP dehydratase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily.
 
  
 0.810
AT05_10070
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.746
AT05_07305
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 
 0.743
AT05_02940
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.736
Your Current Organism:
Schleiferia thermophila
NCBI taxonomy Id: 1453500
Other names: S. thermophila str. Yellowstone, Schleiferia thermophila str. Yellowstone
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.