STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT05_08320Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (267 aa)    
Predicted Functional Partners:
AT05_01795
D,D-heptose 1,7-bisphosphate phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.719
AT05_10070
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.624
AT05_08325
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.552
AT05_04510
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.544
AT05_05255
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
    0.514
AT05_03765
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.510
AT05_10790
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
    0.504
AT05_10435
Ubiquinone biosynthesis protein UbiA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.503
AT05_04315
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
    0.472
AT05_04920
Outer membrane assembly lipoprotein YfiO; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.467
Your Current Organism:
Schleiferia thermophila
NCBI taxonomy Id: 1453500
Other names: S. thermophila str. Yellowstone, Schleiferia thermophila str. Yellowstone
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