STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT05_08465Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (229 aa)    
Predicted Functional Partners:
AT05_08460
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
      0.977
AT05_00835
Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.908
AT05_00770
Nucleoside-diphosphate sugar epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.853
AT05_01415
NmrA family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.853
AT05_02410
Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.838
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 0.838
AT05_08785
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
   0.753
AT05_11630
Cytochrome C oxidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the heme-copper respiratory oxidase family.
    
   0.724
AT05_11625
Cytochrome C oxidase subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
    
   0.686
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
     
 0.617
Your Current Organism:
Schleiferia thermophila
NCBI taxonomy Id: 1453500
Other names: S. thermophila str. Yellowstone, Schleiferia thermophila str. Yellowstone
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