STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT05_09390FeS assembly protein SufD; Derived by automated computational analysis using gene prediction method: Protein Homology. (439 aa)    
Predicted Functional Partners:
AT05_09395
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.998
AT05_10700
Cysteine desulfurase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
 
 0.985
AT05_09405
Iron-sulfur binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HesB/IscA family.
  
 
 0.847
AT05_09400
Cysteine desulfurase activator complex subunit SufB; With SufCD activates cysteine desulfurase SufS; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
0.790
AT05_02640
FeS assembly SUF system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.746
AT05_07525
Selenocysteine lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.723
AT05_02645
Fe-S metabolism protein SufE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.517
AT05_09415
ATP-dependent Clp protease ClpS; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ClpS family.
   
   0.477
Your Current Organism:
Schleiferia thermophila
NCBI taxonomy Id: 1453500
Other names: S. thermophila str. Yellowstone, Schleiferia thermophila str. Yellowstone
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