STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT05_09805Permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (295 aa)    
Predicted Functional Partners:
AT05_09810
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.578
AT05_09815
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.578
rsmI
16S rRNA methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.578
AT05_09825
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.578
AT05_09835
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
 
    0.489
AT05_09610
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
   0.457
AT05_10645
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
   0.457
AT05_05605
Cystathionine beta-synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.436
tdk
Thymidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.431
AT05_08305
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.423
Your Current Organism:
Schleiferia thermophila
NCBI taxonomy Id: 1453500
Other names: S. thermophila str. Yellowstone, Schleiferia thermophila str. Yellowstone
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.