STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT05_10055Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (501 aa)    
Predicted Functional Partners:
AT05_10060
Transposase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.894
AT05_10035
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.867
AT05_10050
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.702
AT05_10045
Sodium:solute symporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
       0.653
AT05_10030
Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.608
AT05_01205
NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.547
AT05_01200
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0753 family.
  
     0.521
AT05_10040
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.498
AT05_00415
Heme oxygenase-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.486
AT05_10025
acetyl-CoA synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA.
       0.485
Your Current Organism:
Schleiferia thermophila
NCBI taxonomy Id: 1453500
Other names: S. thermophila str. Yellowstone, Schleiferia thermophila str. Yellowstone
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