STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT05_10565Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (507 aa)    
Predicted Functional Partners:
AT05_02410
Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.712
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
    
   0.712
AT05_10560
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.631
AT05_10570
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.539
AT05_10575
Phage-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.522
AT05_10555
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.520
AT05_10550
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.479
gltX
glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.
   
 
  0.458
AT05_00055
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.457
AT05_02215
3-oxoacyl-ACP synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.457
Your Current Organism:
Schleiferia thermophila
NCBI taxonomy Id: 1453500
Other names: S. thermophila str. Yellowstone, Schleiferia thermophila str. Yellowstone
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.