STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT05_11510Fatty acid hydroxylase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (306 aa)    
Predicted Functional Partners:
AT05_00075
Phytoene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.867
kmo
Kynurenine 3-monooxygenase; Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid; Belongs to the aromatic-ring hydroxylase family. KMO subfamily.
   
 0.747
AT05_00980
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.722
AT05_02205
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 0.722
AT05_05435
Phenylacetic acid degradation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.620
hisS
histidyl-tRNA synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.588
AT05_11505
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.588
AT05_11265
Fatty acid desaturase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.573
AT05_03020
Fatty acid desaturase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.572
AT05_11515
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.538
Your Current Organism:
Schleiferia thermophila
NCBI taxonomy Id: 1453500
Other names: S. thermophila str. Yellowstone, Schleiferia thermophila str. Yellowstone
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