STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MNEG_13549RRM domain-containing protein. (389 aa)    
Predicted Functional Partners:
MNEG_3587
Splicing factor U2af small subunit B.
   
 0.987
MNEG_6392
Splicing factor U2af large subunit B.
  
  
 
0.907
MNEG_7898
Splicing factor U2AF subunit.
     
 
0.900
MNEG_12814
Small nuclear ribonucleoprotein Sm D2.
   
 
 0.774
MNEG_6772
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 
 0.768
MNEG_2844
Splicing factor 3B subunit 1.
   
 
 0.762
MNEG_13415
Putative small nuclear ribonucleoprotein F.
   
 
 0.759
MNEG_0605
Uncharacterized protein.
   
 0.754
MNEG_7338
U1 small nuclear ribonucleoprotein.
   
 0.744
MNEG_5753
Small nuclear ribonucleoprotein G.
   
   0.738
Your Current Organism:
Monoraphidium neglectum
NCBI taxonomy Id: 145388
Other names: M. neglectum, Monoraphidium neglectum Heynig & Krienitz, SAG 48.87
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.