STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MNEG_9509Helicase ATP-binding domain-containing protein. (183 aa)    
Predicted Functional Partners:
MNEG_15758
Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16.
 
 0.985
MNEG_16127
Putative ATP-dependent RNA helicase.
 
 0.977
MNEG_0276
ATP-dependent RNA helicase DDX35.
 
     0.952
MNEG_14932
ATP-dependent RNA helicase DHX8/PRP22.
 
     0.926
MNEG_16277
Uncharacterized protein.
   
 0.824
MNEG_3020
DEAD-box ATP-dependent RNA helicase 36; Belongs to the DEAD box helicase family.
   
 0.822
MNEG_13697
Pre-mRNA-processing factor SLU7.
    
 0.813
MNEG_9757
Pre-mRNA-splicing factor SYF2.
    
 0.802
MNEG_14012
Utp12 domain-containing protein.
   
  0.792
MNEG_11932
Sas10 domain-containing protein.
   
  0.782
Your Current Organism:
Monoraphidium neglectum
NCBI taxonomy Id: 145388
Other names: M. neglectum, Monoraphidium neglectum Heynig & Krienitz, SAG 48.87
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