STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MNEG_6094Methyl-CpG binding domain protein 4. (753 aa)    
Predicted Functional Partners:
MNEG_13134
Histone deacetylase.
    
 0.800
MNEG_14347
Histone deacetylase 1/2.
    
 0.800
MNEG_10194
Histone deacetylase 1/2.
    
 0.800
MNEG_1416
Histone-binding protein RBBP4.
    
 0.767
MNEG_6548
WD-40 repeat-containing protein MSI1.
    
 0.767
MNEG_5627
Uncharacterized protein.
    
 0.767
MNEG_16265
ARID domain-containing protein.
    
  0.628
MNEG_15525
CHD3-type chromatin-remodeling factor PICKLE.
    
 0.618
MNEG_14725
Uncharacterized protein.
    
 0.618
MNEG_15550
SNF2 family DNA-dependent ATPase.
    
 0.618
Your Current Organism:
Monoraphidium neglectum
NCBI taxonomy Id: 145388
Other names: M. neglectum, Monoraphidium neglectum Heynig & Krienitz, SAG 48.87
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.