STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MNEG_5422CUG-BP-and ETR-3-like factor 4. (576 aa)    
Predicted Functional Partners:
MNEG_7338
U1 small nuclear ribonucleoprotein.
  
 
 0.546
MNEG_4491
Eukaryotic translation initiation factor 3 subunit G; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. This subunit can bind 18S rRNA.
  
 0.515
MNEG_10207
Cleavage stimulation factor subunit.
  
 
 0.503
MNEG_12151
Splicing factor, arginine/serine-rich 1/9.
  
 
  0.501
MNEG_15860
Putative RNA-binding protein.
  
   0.481
MNEG_10950
DAZ-associated protein 1.
  
 
 0.477
MNEG_1489
THO complex subunit 4.
  
 
 0.477
MNEG_13944
Polyadenylate-binding protein 2.
  
 
  0.474
MNEG_8037
U1 small nuclear ribonucleoprotein A.
    
 0.463
MNEG_7898
Splicing factor U2AF subunit.
  
 
  0.452
Your Current Organism:
Monoraphidium neglectum
NCBI taxonomy Id: 145388
Other names: M. neglectum, Monoraphidium neglectum Heynig & Krienitz, SAG 48.87
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