STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MNEG_0465DNA excision repair protein ERCC-6. (315 aa)    
Predicted Functional Partners:
MNEG_0466
Putative DNA repair and recombination protein RAD26-like protein.
 
     0.952
MNEG_16249
DNA excision repair protein ERCC-6.
 
     0.951
MNEG_12379
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
    
 0.905
MNEG_12572
Uncharacterized protein.
    
 0.862
MNEG_12639
DNA-directed RNA polymerase II subunit RPB3-A.
   
  0.843
MNEG_13394
Putative DNA repair protein UVH3.
   
 0.842
MNEG_5322
DNA-directed RNA polymerase II subunit RPB7.
    
 0.833
MNEG_9762
DNA-directed RNA polymerases I, II, and III subunit RPABC2.
    
 0.832
MNEG_9076
DNA-directed RNA polymerase II subunit E.
    
  0.825
MNEG_7835
DNA-directed RNA polymerases I, II, and III subunit RPABC3; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.
    
  0.825
Your Current Organism:
Monoraphidium neglectum
NCBI taxonomy Id: 145388
Other names: M. neglectum, Monoraphidium neglectum Heynig & Krienitz, SAG 48.87
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.