STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MNEG_13134Histone deacetylase. (161 aa)    
Predicted Functional Partners:
MNEG_16265
ARID domain-containing protein.
   
 0.957
MNEG_3992
Transducin (Beta)-like 1.
   
 0.922
MNEG_16675
Uncharacterized protein.
   
 
 0.836
MNEG_0847
ATP-dependent helicase STH1/SNF2.
    
 0.833
MNEG_11944
Uncharacterized protein.
   
 0.832
MNEG_5802
Uncharacterized protein.
   
 0.832
MNEG_1416
Histone-binding protein RBBP4.
   
 0.832
MNEG_6548
WD-40 repeat-containing protein MSI1.
   
 0.832
MNEG_6131
Uncharacterized protein.
   
 0.832
MNEG_5627
Uncharacterized protein.
   
 0.832
Your Current Organism:
Monoraphidium neglectum
NCBI taxonomy Id: 145388
Other names: M. neglectum, Monoraphidium neglectum Heynig & Krienitz, SAG 48.87
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.