STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MNEG_12521ABC transporter domain-containing protein. (260 aa)    
Predicted Functional Partners:
MNEG_16424
ABC transporter domain-containing protein.
 
    
0.907
MNEG_13199
Putative ABC transporter ATP-binding protein.
 
      0.537
MNEG_15345
ATP-binding cassette sub-family E member 1.
   
 
 0.528
MNEG_16279
ATP-binding cassette, sub-family E,member 1.
   
 
 0.528
MNEG_12110
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
 
 0.526
MNEG_16224
Uncharacterized protein.
   
 
  0.504
MNEG_13224
50S ribosomal protein L27.
  
 
 0.495
MNEG_10096
Uncharacterized protein.
   
 
 0.490
MNEG_4919
30S ribosomal protein S16.
  
   0.469
MNEG_4474
50S ribosomal protein L33.
   
 
 0.468
Your Current Organism:
Monoraphidium neglectum
NCBI taxonomy Id: 145388
Other names: M. neglectum, Monoraphidium neglectum Heynig & Krienitz, SAG 48.87
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