MNEG_10079 protein (Monoraphidium neglectum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MNEG_10079

Uncharacterized protein. (352 aa)

Predicted Functional Partners:

MNEG_11737

0.883

LSM1

0.678

MNEG_14329

0.651

MNEG_14195

0.651

MNEG_8959

0.631

MNEG_9262

0.629

MNEG_8955

0.606

MNEG_8994

0.583

LSM5

0.571

MNEG_3237

0.568

Your Current Organism:

Monoraphidium neglectum

NCBI taxonomy Id: 145388
Other names: M. neglectum, Monoraphidium neglectum Heynig & Krienitz, SAG 48.87

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM1	LSM5	A0A0D2MQ29	A0A0D2K926	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.984
LSM1	MNEG_10079	A0A0D2MQ29	A0A0D2KQI0	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Uncharacterized protein.	0.678
LSM1	MNEG_11737	A0A0D2MQ29	A0A0D2LXU8	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	YjeF N-terminal domain-containing protein.	0.842
LSM1	MNEG_14195	A0A0D2MQ29	A0A0D2KD96	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Uncharacterized protein.	0.752
LSM1	MNEG_14329	A0A0D2MQ29	A0A0D2J0S1	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Uncharacterized protein.	0.752
LSM1	MNEG_8955	A0A0D2MQ29	A0A0D2MXU8	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	U6 snRNA-associated Sm-like protein LSm7.	0.989
LSM1	MNEG_9262	A0A0D2MQ29	A0A0D2MD64	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Putative U6 snRNA-associated Sm-like protein LSm2.	0.984
LSM5	LSM1	A0A0D2K926	A0A0D2MQ29	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.984
LSM5	MNEG_10079	A0A0D2K926	A0A0D2KQI0	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	Uncharacterized protein.	0.571
LSM5	MNEG_11737	A0A0D2K926	A0A0D2LXU8	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	YjeF N-terminal domain-containing protein.	0.751
LSM5	MNEG_14195	A0A0D2K926	A0A0D2KD96	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	Uncharacterized protein.	0.698
LSM5	MNEG_14329	A0A0D2K926	A0A0D2J0S1	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	Uncharacterized protein.	0.698
LSM5	MNEG_8955	A0A0D2K926	A0A0D2MXU8	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm7.	0.998
LSM5	MNEG_9262	A0A0D2K926	A0A0D2MD64	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	Putative U6 snRNA-associated Sm-like protein LSm2.	0.998
MNEG_10079	LSM1	A0A0D2KQI0	A0A0D2MQ29	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.678
MNEG_10079	LSM5	A0A0D2KQI0	A0A0D2K926	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.571
MNEG_10079	MNEG_11737	A0A0D2KQI0	A0A0D2LXU8	Uncharacterized protein.	YjeF N-terminal domain-containing protein.	0.883
MNEG_10079	MNEG_14195	A0A0D2KQI0	A0A0D2KD96	Uncharacterized protein.	Uncharacterized protein.	0.651
MNEG_10079	MNEG_14329	A0A0D2KQI0	A0A0D2J0S1	Uncharacterized protein.	Uncharacterized protein.	0.651
MNEG_10079	MNEG_3237	A0A0D2KQI0	A0A0D2K2E7	Uncharacterized protein.	Nonspecific lipid-transfer protein.	0.568