STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MNEG_6878Histone H3; Belongs to the histone H3 family. (136 aa)    
Predicted Functional Partners:
MNEG_12546
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
 
 0.983
MNEG_7225
Histone H2A; Belongs to the histone H2A family.
   
 0.938
MNEG_0847
ATP-dependent helicase STH1/SNF2.
   
 0.930
MNEG_15304
Ebs-bah-phd domain-containing protein.
    
 0.926
MNEG_0868
Set1/Ash2 histone methyltransferase complex subunit ASH2.
    
 0.887
MNEG_15432
Uncharacterized protein.
    
 0.878
MNEG_1960
Enhancer of zeste.
   
 0.873
MNEG_2692
DNA-directed RNA polymerases I, II, and III subunit RPABC4.
   
  0.865
MNEG_7835
DNA-directed RNA polymerases I, II, and III subunit RPABC3; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.
   
  0.864
MNEG_9076
DNA-directed RNA polymerase II subunit E.
    
 0.860
Your Current Organism:
Monoraphidium neglectum
NCBI taxonomy Id: 145388
Other names: M. neglectum, Monoraphidium neglectum Heynig & Krienitz, SAG 48.87
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.