STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MNEG_3544Putative AAA domain-containing protein. (758 aa)    
Predicted Functional Partners:
MNEG_8582
DEAD-box ATP-dependent RNA helicase 16.
   
   0.783
MNEG_11598
RNA-binding protein 28.
   
  
 0.700
MNEG_15860
Putative RNA-binding protein.
   
  
 0.700
MNEG_0464
Nuclear/nucleolar GTPase 2; GTPase involved in pre-60S ribosomal subunit maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.
   
 
 0.691
MNEG_16525
DSHCT domain-containing protein.
   
 
 0.682
MNEG_11771
ATP-dependent RNA helicase DOB1.
   
 
 0.682
MNEG_9013
ATP-dependent RNA helicase DOB1.
   
 
 0.682
MNEG_3768
WD repeat-containing protein 74.
   
 
 0.663
MNEG_1452
WD_REPEATS_REGION domain-containing protein.
   
 
 0.663
MNEG_8098
Uncharacterized protein.
   
    0.656
Your Current Organism:
Monoraphidium neglectum
NCBI taxonomy Id: 145388
Other names: M. neglectum, Monoraphidium neglectum Heynig & Krienitz, SAG 48.87
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