STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MNEG_14696Branched-chain amino acidaminotransferase. (322 aa)    
Predicted Functional Partners:
MNEG_8236
2-oxoisovalerate dehydrogenase E1 component, beta subunit.
  
 0.960
MNEG_7357
2-isopropylmalate synthase.
  
 0.959
MNEG_1340
3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate.
    
 0.948
MNEG_7562
Cystathionine gamma-synthase.
   
 0.919
MNEG_13638
Glutamate--cysteine ligase.
    
  0.901
MNEG_3706
Homoserine dehydrogenase.
  
 
 0.885
MNEG_6061
Threonine dehydratase.
  
 
 0.885
MNEG_0433
Homoserine kinase.
  
 
 0.881
MNEG_12685
Dihydroxy-acid dehydratase.
  
 0.805
MNEG_14675
Dihydroxy-acid dehydratase.
  
 0.802
Your Current Organism:
Monoraphidium neglectum
NCBI taxonomy Id: 145388
Other names: M. neglectum, Monoraphidium neglectum Heynig & Krienitz, SAG 48.87
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