STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MNEG_14442U-box domain-containing protein. (119 aa)    
Predicted Functional Partners:
MNEG_1048
Ubiquilin-1.
    
 0.835
MNEG_9437
E3 ubiquitin-protein ligase TRIP12.
   
 0.796
MNEG_16285
E3 ubiquitin-protein ligase.
   
 0.796
MNEG_8753
E3 ubiquitin-protein ligase TRIP12.
   
 0.796
MNEG_4918
NSFL1 cofactor.
    
 
 0.760
MNEG_15906
Putative DNA repair protein RAD23-3.
   
 0.654
MNEG_5638
UV excision repair protein RAD23.
   
 0.654
MNEG_13835
Uncharacterized protein.
    
 
 0.649
MNEG_0214
Uncharacterized protein.
    
 
 0.649
MNEG_4147
NPL4-like protein 1.
    
 
 0.642
Your Current Organism:
Monoraphidium neglectum
NCBI taxonomy Id: 145388
Other names: M. neglectum, Monoraphidium neglectum Heynig & Krienitz, SAG 48.87
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.