STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MNEG_7217RAI1 domain-containing protein. (389 aa)    
Predicted Functional Partners:
MNEG_3920
Regulation of nuclear pre-mRNA domain-containing protein 1B.
    
 
 0.898
MNEG_8994
Exosome complex exonuclease RRP42.
   
   0.882
MNEG_10304
5'-3' exoribonuclease 2.
   
 
 0.865
MNEG_15732
5'-3' exoribonuclease 2.
   
 
 0.865
MNEG_12411
5'-3' exoribonuclease 2.
   
 
 0.865
MNEG_6174
Putative DCP2 decapping enzyme.
      
 0.577
MNEG_10405
Uncharacterized protein.
   
  
 0.448
MNEG_11650
5'-3' exoribonuclease 1.
    
 
 0.412
MNEG_9905
Uncharacterized protein.
   
    0.412
MNEG_3296
XRN_N domain-containing protein.
    
 
 0.412
Your Current Organism:
Monoraphidium neglectum
NCBI taxonomy Id: 145388
Other names: M. neglectum, Monoraphidium neglectum Heynig & Krienitz, SAG 48.87
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.