STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MNEG_5791Splicing factor 4. (170 aa)    
Predicted Functional Partners:
MNEG_8349
DNA-damage-repair/toleration protein.
   
 
 0.856
MNEG_5723
Uncharacterized protein.
    
  0.652
MNEG_10041
Splicing factor 1.
   
 0.617
MNEG_8839
SF1-HH domain-containing protein.
   
 0.617
MNEG_0506
C3H1-type domain-containing protein.
   
 0.617
MNEG_7476
PWI domain-containing protein.
   
 
 0.601
MNEG_13167
RNA-binding protein 25.
   
 
 0.601
MNEG_7138
HNH domain-containing protein.
   
 
  0.538
MNEG_0763
DUF262 domain-containing protein.
   
 
  0.538
MNEG_10772
Pre-mRNA-splicing factor CWC21.
   
 
  0.538
Your Current Organism:
Monoraphidium neglectum
NCBI taxonomy Id: 145388
Other names: M. neglectum, Monoraphidium neglectum Heynig & Krienitz, SAG 48.87
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.