STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MNEG_7918HIV-1 Vpr-binding protein. (743 aa)    
Predicted Functional Partners:
MNEG_2408
DNA damage-binding protein 1a.
    
 
 0.835
MNEG_5133
Uncharacterized protein.
    
 
 0.835
MNEG_4176
RING-box protein 1.
    
 
 0.814
MNEG_4938
Cullin 4; Belongs to the cullin family.
   
 
 0.801
MNEG_1270
Cullin 4.
   
 
 0.801
MNEG_14787
Uracil-DNA glycosylase.
    
 
 0.734
MNEG_13273
YqaJ domain-containing protein.
    
 
 0.734
MNEG_11419
HIV-1 Vpr-binding protein.
 
     0.681
MNEG_15571
SAM domain and HD domain-containing protein 1.
    
 
 0.615
MNEG_13624
Uncharacterized protein.
    
 
 0.615
Your Current Organism:
Monoraphidium neglectum
NCBI taxonomy Id: 145388
Other names: M. neglectum, Monoraphidium neglectum Heynig & Krienitz, SAG 48.87
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.