STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MNEG_7467Pre-mRNA-splicing helicase BRR2. (223 aa)    
Predicted Functional Partners:
MNEG_16321
Pre-mRNA-splicing helicase BRR2.
 
     0.917
MNEG_16446
Helicase C-terminal domain-containing protein.
 
 
    0.903
MNEG_16133
Uncharacterized protein.
 
 
    0.903
MNEG_15093
Small nuclear ribonucleoprotein.
 
      0.900
MNEG_14497
SEC63 domain-containing protein.
 
 
    0.871
MNEG_13415
Putative small nuclear ribonucleoprotein F.
   
 0.854
MNEG_10943
Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.
   
 0.852
MNEG_6772
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.852
MNEG_6103
DEAD-box ATP-dependent RNA helicase 22.
   
 0.851
MNEG_12814
Small nuclear ribonucleoprotein Sm D2.
   
 0.840
Your Current Organism:
Monoraphidium neglectum
NCBI taxonomy Id: 145388
Other names: M. neglectum, Monoraphidium neglectum Heynig & Krienitz, SAG 48.87
Server load: low (22%) [HD]