STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MNEG_6949Pre-mRNA-splicing factor SYF1. (197 aa)    
Predicted Functional Partners:
MNEG_11757
Protein crooked neck.
   
 0.989
MNEG_3184
Putative Pre-mRNA-splicing factor ISY1 like protein.
    
 0.982
MNEG_4873
RRM domain-containing protein.
   
 0.982
MNEG_11053
Uncharacterized protein.
    
 0.982
MNEG_8801
Pre-mRNA-splicing factor RBM22/SLT11.
   
 0.979
MNEG_10147
Uncharacterized protein.
   
 
 0.960
MNEG_10828
Splicing factor 3A subunit 3.
   
 
 0.960
MNEG_15122
Uncharacterized protein.
   
 0.959
MNEG_2228
SNW domain-containing protein 1.
   
 0.959
MNEG_15035
Uncharacterized protein.
   
 0.956
Your Current Organism:
Monoraphidium neglectum
NCBI taxonomy Id: 145388
Other names: M. neglectum, Monoraphidium neglectum Heynig & Krienitz, SAG 48.87
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.