MNEG_5179 protein (Monoraphidium neglectum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MNEG_5179

ApbA domain-containing protein. (77 aa)

Predicted Functional Partners:

MNEG_8754

0.967

MNEG_2180

0.947

MNEG_6195

0.847

MNEG_4479

0.795

MNEG_10597

0.795

MNEG_3237

0.787

MNEG_7938

0.787

MNEG_10564

0.781

MNEG_5186

0.781

MNEG_16373

0.776

Your Current Organism:

Monoraphidium neglectum

NCBI taxonomy Id: 145388
Other names: M. neglectum, Monoraphidium neglectum Heynig & Krienitz, SAG 48.87

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MNEG_10564	MNEG_5179	A0A0D2JCI9	A0A0D2NBB0	Alkyl transferase; Belongs to the UPP synthase family.	ApbA domain-containing protein.	0.781
MNEG_10564	MNEG_6195	A0A0D2JCI9	A0A0D2MF40	Alkyl transferase; Belongs to the UPP synthase family.	Glutamine amidotransferase type-1 domain-containing protein.	0.474
MNEG_10597	MNEG_4479	A0A0D2M114	A0A0D2JXY2	Lactoylglutathione lyase; Catalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione.	Uncharacterized protein.	0.925
MNEG_10597	MNEG_5179	A0A0D2M114	A0A0D2NBB0	Lactoylglutathione lyase; Catalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione.	ApbA domain-containing protein.	0.795
MNEG_16373	MNEG_5179	A0A0D2LNN5	A0A0D2NBB0	GMP synthase (Glutamine-hydrolysing).	ApbA domain-containing protein.	0.776
MNEG_16373	MNEG_6195	A0A0D2LNN5	A0A0D2MF40	GMP synthase (Glutamine-hydrolysing).	Glutamine amidotransferase type-1 domain-containing protein.	0.744
MNEG_2180	MNEG_3237	A0A0D2NMC7	A0A0D2K2E7	Isocitrate lyase.	Nonspecific lipid-transfer protein.	0.953
MNEG_2180	MNEG_5179	A0A0D2NMC7	A0A0D2NBB0	Isocitrate lyase.	ApbA domain-containing protein.	0.947
MNEG_2180	MNEG_7938	A0A0D2NMC7	A0A0D2KXM2	Isocitrate lyase.	Peroxisomal multifunctional enzyme A.	0.953
MNEG_3237	MNEG_2180	A0A0D2K2E7	A0A0D2NMC7	Nonspecific lipid-transfer protein.	Isocitrate lyase.	0.953
MNEG_3237	MNEG_5179	A0A0D2K2E7	A0A0D2NBB0	Nonspecific lipid-transfer protein.	ApbA domain-containing protein.	0.787
MNEG_3237	MNEG_7938	A0A0D2K2E7	A0A0D2KXM2	Nonspecific lipid-transfer protein.	Peroxisomal multifunctional enzyme A.	0.912
MNEG_4479	MNEG_10597	A0A0D2JXY2	A0A0D2M114	Uncharacterized protein.	Lactoylglutathione lyase; Catalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione.	0.925
MNEG_4479	MNEG_5179	A0A0D2JXY2	A0A0D2NBB0	Uncharacterized protein.	ApbA domain-containing protein.	0.795
MNEG_5179	MNEG_10564	A0A0D2NBB0	A0A0D2JCI9	ApbA domain-containing protein.	Alkyl transferase; Belongs to the UPP synthase family.	0.781
MNEG_5179	MNEG_10597	A0A0D2NBB0	A0A0D2M114	ApbA domain-containing protein.	Lactoylglutathione lyase; Catalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione.	0.795
MNEG_5179	MNEG_16373	A0A0D2NBB0	A0A0D2LNN5	ApbA domain-containing protein.	GMP synthase (Glutamine-hydrolysing).	0.776
MNEG_5179	MNEG_2180	A0A0D2NBB0	A0A0D2NMC7	ApbA domain-containing protein.	Isocitrate lyase.	0.947
MNEG_5179	MNEG_3237	A0A0D2NBB0	A0A0D2K2E7	ApbA domain-containing protein.	Nonspecific lipid-transfer protein.	0.787
MNEG_5179	MNEG_4479	A0A0D2NBB0	A0A0D2JXY2	ApbA domain-containing protein.	Uncharacterized protein.	0.795