STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MNEG_4386Putative ATP-dependent RNA helicase DHX57. (1426 aa)    
Predicted Functional Partners:
MNEG_4385
Putative DEAH-box ATP-dependent helicase.
 
      0.900
MNEG_12324
Ubiquitin-like domain-containing protein.
    
 0.744
MNEG_11904
AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.
    
 0.716
MNEG_6783
Putative Nucleolar complex protein 4.
   
  0.675
MNEG_16277
Uncharacterized protein.
   
 0.658
MNEG_13697
Pre-mRNA-processing factor SLU7.
    
 0.641
MNEG_6894
U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.
   
  0.591
MNEG_9757
Pre-mRNA-splicing factor SYF2.
    
 0.590
MNEG_10991
PINc domain-containing protein.
   
 0.579
MNEG_8037
U1 small nuclear ribonucleoprotein A.
    
 0.579
Your Current Organism:
Monoraphidium neglectum
NCBI taxonomy Id: 145388
Other names: M. neglectum, Monoraphidium neglectum Heynig & Krienitz, SAG 48.87
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