STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rsePRegulator of sigma E protease. (240 aa)    
Predicted Functional Partners:
bamA
Outer membrane protein Omp85; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
  
 0.974
skp
Cationic 19 kDa outer membrane protein; Belongs to the skp family.
  
  
 0.871
ispU
Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific); Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
  
  
 0.828
lepB
Signal peptidase I; Belongs to the peptidase S26 family.
 
  
 0.697
rssA_2
NTE family protein RssA.
  
  
 0.696
AW07_04669
Hypothetical protein.
  
  
 0.696
gltB_2
Ferredoxin-dependent glutamate synthase 1.
  
  
 0.580
proS
Proline--tRNA ligase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacy [...]
 
    0.575
ftsK
DNA translocase FtsK.
 
    0.509
pyrH
Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP.
  
  
 0.504
Your Current Organism:
Accumulibacter sp. SK11
NCBI taxonomy Id: 1454000
Other names: C. Accumulibacter sp. SK-11, Candidatus Accumulibacter sp. SK-11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.