STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AW08_00241Putative metal-dependent hydrolase of the TIM-barrel fold protein. (411 aa)    
Predicted Functional Partners:
ascD_2
CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase.
  
 
  0.700
ascD_1
CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase.
  
 
  0.691
AW08_00780
Hypothetical protein.
  
     0.682
AW08_00242
Surface antigen.
       0.678
AW08_01602
TRAP transporter solute receptor, TAXI family.
  
  
  0.675
AW08_01440
Putative regulator of ribonuclease activity; Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions.
    
 0.670
AW08_01721
Hypothetical protein.
    
  0.627
AW08_03393
Putative PEP-CTERM system histidine kinase.
  
     0.616
gltI_1
Glutamate/aspartate periplasmic-binding protein precursor.
       0.588
AW08_03379
Hypothetical protein.
  
     0.587
Your Current Organism:
Accumulibacter sp. SK12
NCBI taxonomy Id: 1454001
Other names: C. Accumulibacter sp. SK-12, Candidatus Accumulibacter sp. SK-12
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