STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AW08_01121Hypothetical protein. (75 aa)    
Predicted Functional Partners:
AW08_00909
Rieske [2Fe-2S] domain protein.
   
  0.934
nasE
Assimilatory nitrite reductase [NAD(P)H] small subunit.
   
  0.934
kinA
Sporulation kinase A.
       0.802
zraR_2
Transcriptional regulatory protein ZraR.
       0.799
ampD
1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD.
       0.799
ascD_2
CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase.
  
 
 0.774
ascD_1
CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase.
  
 
 0.759
ribBA
Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.699
AW08_03512
Glyoxalase-like domain protein.
    
  0.654
gmr_6
Cyclic di-GMP phosphodiesterase Gmr.
    
  0.652
Your Current Organism:
Accumulibacter sp. SK12
NCBI taxonomy Id: 1454001
Other names: C. Accumulibacter sp. SK-12, Candidatus Accumulibacter sp. SK-12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.