STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpfG_4Cyclic di-GMP phosphodiesterase response regulator RpfG. (977 aa)    
Predicted Functional Partners:
gmr_6
Cyclic di-GMP phosphodiesterase Gmr.
 
 0.828
cyaA
Adenylate cyclase 1.
 
  
  0.798
AW08_02177
PAS domain S-box protein.
  
 
 0.765
prkC_3
Serine/threonine-protein kinase PrkC.
 
 
 0.755
gmr_1
Cyclic di-GMP phosphodiesterase Gmr.
 
 0.752
gmr_2
Cyclic di-GMP phosphodiesterase Gmr.
 
 0.750
AW08_01986
Putative diguanylate cyclase.
 
 
 0.699
metH
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
     
 0.671
gmr_5
Cyclic di-GMP phosphodiesterase Gmr.
 
 
 
 0.665
pyk
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
  0.639
Your Current Organism:
Accumulibacter sp. SK12
NCBI taxonomy Id: 1454001
Other names: C. Accumulibacter sp. SK-12, Candidatus Accumulibacter sp. SK-12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.