STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
efe2-oxoglutarate-dependent ethylene/succinate-forming enzyme; Belongs to the iron/ascorbate-dependent oxidoreductase family. (328 aa)    
Predicted Functional Partners:
eryA
Erythronolide synthase, modules 3 and 4.
    
 0.812
AW08_02904
Hypothetical protein.
       0.773
AW08_03729
Long-chain-fatty-acid--AMP ligase FadD29.
     
 0.718
AW08_02903
Putative radical SAM protein YgiQ.
       0.693
gltK
Glutamate/aspartate transport system permease protein GltK.
   
 
  0.636
yecS
Inner membrane amino-acid ABC transporter permease protein YecS.
   
 
  0.634
artQ
Arginine transport system permease protein ArtQ.
   
 
  0.634
argD
Acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
     
 0.628
adh
Alcohol dehydrogenase.
   
 
 0.617
gatA
Glutamyl-tRNA(Gln) amidotransferase subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).
    
  0.612
Your Current Organism:
Accumulibacter sp. SK12
NCBI taxonomy Id: 1454001
Other names: C. Accumulibacter sp. SK-12, Candidatus Accumulibacter sp. SK-12
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