STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fadDLong-chain-fatty-acid--CoA ligase. (559 aa)    
Predicted Functional Partners:
AW12_02279
Putative ligase.
 
0.958
fadN
Putative 3-hydroxyacyl-CoA dehydrogenase.
 
 0.943
fadJ
Fatty acid oxidation complex subunit alpha.
 
 0.939
hoxF
NAD-reducing hydrogenase HoxS subunit alpha.
    
   0.933
echA8_1
Putative enoyl-CoA hydratase echA8.
  
 0.929
lplT_1
Lysophospholipid transporter LplT.
 
 0.921
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.905
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
    
 
 0.827
rplO
50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
    
   0.827
rplX
50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.
    
   0.824
Your Current Organism:
Accumulibacter sp. BA94
NCBI taxonomy Id: 1454005
Other names: C. Accumulibacter sp. BA-94, Candidatus Accumulibacter sp. BA-94
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