STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR02371.1PspC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (75 aa)    
Predicted Functional Partners:
AJR02370.1
Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.816
AJR03205.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.808
AJR04043.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.700
AJR02372.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.671
AJR02368.1
Competence protein ComEA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.654
AJR02369.1
D-alanine glycine permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.571
AJR04580.1
Serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.566
AJR03152.1
ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.553
AJR04932.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 
 0.553
AJR02918.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.517
Your Current Organism:
Siansivirga zeaxanthinifaciens
NCBI taxonomy Id: 1454006
Other names: S. zeaxanthinifaciens CC-SAMT-1, Siansivirga zeaxanthinifaciens CC-SAMT-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.