STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR02751.1TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (803 aa)    
Predicted Functional Partners:
recO
DNA recombination protein RecO; Involved in DNA repair and RecF pathway recombination.
       0.798
AJR02753.1
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.797
AJR02754.1
Converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
       0.500
AJR03769.1
Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.499
AJR02652.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.491
AJR03129.1
Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.446
AJR02545.1
Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.423
AJR03128.1
Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.408
Your Current Organism:
Siansivirga zeaxanthinifaciens
NCBI taxonomy Id: 1454006
Other names: S. zeaxanthinifaciens CC-SAMT-1, Siansivirga zeaxanthinifaciens CC-SAMT-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.