STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR03298.1Deacylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (365 aa)    
Predicted Functional Partners:
AJR03299.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.956
AJR02516.1
Peptidase C25; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.887
AJR04961.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.753
AJR04190.1
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
  
     0.742
AJR04276.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.710
AJR03297.1
5,10-methylenetetrahydrofolate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the methylenetetrahydrofolate reductase family.
       0.691
AJR03347.1
ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.689
AJR02501.1
Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.685
AJR02330.1
N-acetylmuramidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.666
AJR04249.1
Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.627
Your Current Organism:
Siansivirga zeaxanthinifaciens
NCBI taxonomy Id: 1454006
Other names: S. zeaxanthinifaciens CC-SAMT-1, Siansivirga zeaxanthinifaciens CC-SAMT-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.