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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SD78_0200Alcohol dehydrogenase. (380 aa)    
Predicted Functional Partners:
SD78_0556
Alcohol dehydrogenase.
 0.987
SD78_0204
Alcohol dehydrogenase.
  
 0.916
SD78_0201
Two-component sensor histidine kinase.
 
     0.837
SD78_3839
2-oxoglutarate oxidoreductase, alpha subunit.
  
 
 0.810
SD78_3458
Succinyl-CoA:3-ketoacid-coenzyme A transferase.
  
 
 0.774
SD78_0097
Enoyl-CoA hydratase.
  
 0.767
SD78_0202
Response regulator of zinc sigma-54-dependent two-component system.
       0.765
SD78_3055
Glycerol dehydrogenase.
 
 
 0.731
SD78_1200
NADH-dependent butanol dehydrogenase A.
  
  
0.631
SD78_0842
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
  0.605
Your Current Organism:
Bacillus badius
NCBI taxonomy Id: 1455
Other names: ATCC 14574, B. badius, Bacillus encimensis, Bacillus encimensis Dastager et al. 2015, Bacillus sp. SGD-V-25, CCUG 7412, CIP 58.52, DSM 23, DSM 28241 [[Bacillus encimensis]], IFO 15713, JCM 12228, LMG 7122, LMG:7122, NBRC 15713, NCIB 9364, NCIB:9364, NCIM 5513, NCTC 10333, NRRL NRS-663, VKM B-496, strain SGD-V-25 [[Bacillus encimensis]]
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