STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SD78_0287Thioredoxin reductase. (317 aa)    
Predicted Functional Partners:
SD78_2596
Thioredoxin; Belongs to the thioredoxin family.
 0.992
SD78_3590
Alkyl hydroperoxide reductase subunit C-like protein.
  
 
 0.833
SD78_1342
CoA-disulfide reductase; Belongs to the sulfur carrier protein TusA family.
    
 0.807
SD78_1620
Ferredoxin.
   
 
 0.659
SD78_3399
Dihydropyrimidine dehydrogenase.
    
  0.643
SD78_0079
Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
   
 
  0.637
SD78_0194
Thioredoxin.
  
 0.627
SD78_2581
TPR repeat protein.
  
 0.627
SD78_3192
Thioredoxin.
  
 0.627
SD78_0288
TPR domain protein.
  
    0.617
Your Current Organism:
Bacillus badius
NCBI taxonomy Id: 1455
Other names: ATCC 14574, B. badius, Bacillus encimensis, Bacillus encimensis Dastager et al. 2015, Bacillus sp. SGD-V-25, CCUG 7412, CIP 58.52, DSM 23, DSM 28241 [[Bacillus encimensis]], IFO 15713, JCM 12228, LMG 7122, LMG:7122, NBRC 15713, NCIB 9364, NCIB:9364, NCIM 5513, NCTC 10333, NRRL NRS-663, VKM B-496, strain SGD-V-25 [[Bacillus encimensis]]
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